If you use custom SGE scripts instead of relying on the standard Fluent option (either the -scheduler=sge option from the command line or the Use SGE option in Fluent Launcher, as described in the preceding sections), your environment variables related to the job scheduler will not be used unless you include the -scheduler_custom_script option with the Fluent options in your script.
Also try -scheduler_tight_coupling, which also internally invokes -scheduler_custom_script
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