This certainly does look specific to the structure. If you add a Hydrostatic table to the Hydrodynamic Diffraction Solution, does everything look sensible - i.e. Actual Volumetric Displacement is positive and close to the value you would expect? Is any part of the structure solid, rather than surfaces?
As a workaround, are you able to use Time Domain Statistics to get the values you need from the project? This will give you the Min/Max values for a given time series, at least. If you also need the full time series of certain output quantities for further post-processing, you can use the AqwaReader command line utility for this - please let me know if you need further info.
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